William Bishop, PhD

Articles in Preparation

Deep probabilistic model synthesis
by W. E. Bishop, L. Hesselink, B. Englitz, J. E. Fitzgerald, M. B. Ahrens.
in preperation.

Single manifold identification and latent estimation
by W. E. Bishop, A. Zandvakili, X. Zhou, S. M. Chase, A. Kohn, B. M. Yu.
in preperation.

Preprints

Dimensionality reduction of calcium-imaged neuronal population activity
by T. H. Koh, W. E. Bishop, T. Kawashima, B. B. Jeon, R. Srinivasan, S. J. Kuhlman, M.B. Ahrens, S. M. Chase*, B. M. Yu*.
* denotes equal contribution
bioRxiv.

Peer Reviewed Publications

Stabilization of a brain-computer interface via the alignment of low-dimensional spaces of neural activity
by A. D. Degenhart^†, W. E. Bishop^†, E. R. Oby, E. C. Tyler-Kabara, S. M. Chase*, A. P. Batista*, B. M. Yu*.
Nat Biomed Eng, vol. 4, 2020, pp. 672-685.
†, * denotes equal contribution
Supp Mats | News & Views | Code

Theoretical principles for illuminating sensorimotor processing with brain-wide neuronal recordings
by T. Biswas, W. E. Bishop, J. E. Fitzgerald.
Curr. Opin. Neurobiol., vol. 65, 2020, pp. 138-145.

Deterministic symmetric positive semidefinite matrix completion
by W. E. Bishop and B. M. Yu.
In Advances in Neural Information Processing Systems 27, 2014, pp. 2762-2770.
Supp Mats

Self-recalibrating classifiers for intracortical brain computer interfaces
by W. E. Bishop, C. A. Chestek, V. Gilja, P. Nuyujukian, J. D. Foster, S. I. Ryu, K. V. Shenoy, B. M. Yu.
J Neural Eng, vol. 11 (026001), 2014.

Real-time decision fusion for multimodal neural prosthetic devices
by J. R. White, T. Levy, W. E. Bishop, J. D. Beaty.
PLoS One, 5(3):e9493, 2010.

Multi-scale recordings for neuroprosthetic control of finger movements
by J. Baker, W. E. Bishop, S. Kellis, T. Levy, P. House, B. Greger.
In Proc 31st Annual Conf IEEE EMBS, 2009, pp. 4573-4577.

An efficient approximation for the real-time implementation of the mixture of trajectory models decoder
by W. Bishop, B. M. Yu, G. Santhanam, A. Afshar, S. I. Ryu, K. V. Shenoy.
In Proc IEEE Biomedical Circuits and Systems Conference, 2008, pp. 133-136.

The use of a virtual integration environment for the real-time implementation of neural decode algorithms
by W. Bishop, B. M. Yu, G. Santhanam, A. Afshar, S. I. Ryu, K. V. Shenoy, J. Vogelstein, J. Beaty, S. Harshbarger.
In Proc 30th Annual Conf IEEE EMBS, 2008, pp. 628-633.

A real-time virtual integration environment for the design and development of neural prosthetic systems
by W. Bishop, R. Armiger, J. Burck, M. Bridges, M. Hauschild, K. Englehart, E. Scheme, R. J. Vogelstein, J. Beaty, S. Harshbarger
In Proc 30th Annual Conf IEEE EMBS, 2008, pp. 615-619.

Abstracts

Inter-areal patterned microstimulation selectively drives PFC activity and behavior in a memory task
by J. S. Magraner, Y. Minai, W. E. Bishop, M. Smith, B. M. Yu
Cosyne Abstracts, no. I-27, 2022.

Exceptionally large rewards lead to a collapse in neural information about upcoming movements
by A. Smoulder, P. Marino, N. Pavlovsky, E. Oby, S. Snyder, W. E. Bishop, B. M. Yu, S. Chase, A. Batista
Cosyne Abstracts, no. II-1, 2022.

Simultaneous dimensionality reduction and deconvolution for calcium imaging recordings
by T. Koh, W. E. Bishop, T. Kawashima, M. B. Ahrens, S. M. Chase*, B. M. Yu*.
Cosyne Abstracts, no. I-29, 2020.

Simultaneous dimensionality reduction and deconvolution of calcium imaging activity
by T. Koh, W. E. Bishop, S. M. Chase*, B. M. Yu*.
SAND Abstracts, no. 33, 2019.

Leveraging low-dimensional structure in neural population activity to combine neural recordings
by W. E. Bishop, E. Crowder, A. Zandvakili, X. Zhou, S. M. Chase, A. Kohn, C. R. Olson, B. M. Yu.
Cosyne Abstracts, no. I-69, 2018.

Neural signal stabilization improves human intracortical BCI control
by A. J. Herrera, A. D. Degenhart, W. E. Bishop, E. R. Oby, E. C. Tyler-Kabara, S. M. Chase, A. P. Batista, B. M. Yu, J. L. Collinger.
Soc Neurosci Abstr, no. 312.19, 2018.

Extracting stable representations of neural population state from unstable neural recordings
by W. E. Bishop^†, A. D. Degenhart^†, E. R. Oby, E. C. Tyler-Kabara, A. P. Batista, S. M. Chase*, B. M. Yu*
Cosyne Abstracts, no. I-35, 2017.
†, * denotes equal contribution

Extracting stable representations of neural population state from unstable neural recordings
by W. E. Bishop^†, A. D. Degenhart^†, E. R. Oby, E. C. Tyler-Kabara, A. P. Batista, S. M. Chase*, B. M. Yu*
Statistical Analysis of Neural Data (SAND) meeting, 2017. Talk.
†, * denotes equal contribution

Matrix completion and implications for combining overlapping population recordings
by W. E. Bishop, B. M. Yu
NeurIPS Workshop on Large Scale Optical Physiology, 2014. Talk.

Self-recalibrating brain-computer interfaces based on population subspace alignment
by A. D. Degenhart, W. E. Bishop, E. R. Oby, E. C. Tyler-Kabara, A. P. Batista, S. M. Chase*, B. M. Yu*
Soc Neurosci Abstr, no. 334.13, 2016.
* denotes equal contribution

Long-term decoding stability without retraining for intracortical brain-computer interfaces
by W. Bishop, C. A. Chestek, V. Gilja, P. Nuyujukian, S. I. Ryu, K. V. Shenoy, and B. M. Yu.
Translational and Computational Motor Control (TCMC), 2012.

Long-term decoding stability without retraining for intracortical brain-computer interfaces
by W. Bishop, C. A. Chestek, V. Gilja, P. Nuyujukian, S. I. Ryu, K. V. Shenoy, and B. M. Yu.
Soc Neurosci Abstr, no. 583.03, 2012.

Long-term decoding stability without retraining for intracortical brain-computer interfaces
by W. Bishop, C. A. Chestek, V. Gilja, P. Nuyujukian, S. I. Ryu, K. V. Shenoy, and B. M. Yu.
SAND Abstracts, 2012.

Long-term decoding stability without retraining for intracortical brain computer interface
by W. E. Bishop, C. A. Chestek, V. Gilja, P. Nuyujukian, S. I. Ryu, K. V. Shenoy, and B. M. Yu.
Cosyne Abstracts, no. III-40, 2012.

Patents